2RR2 Receptor date Feb 26, 2010
title Structure Of O-Fucosylated Epidermal Growth Factor-Like Repe Mouse Notch-1 Receptor
authors K.Hosoguchi, K.Shimizu, N.Fujitani, S.Nishimura
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: A
Fragment: Extracellular Domain Egf-Like Repeat 12
Synonym: Notch 1, Motch A, Mt14, P300
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Other_details: Synthetic Peptide
methodSolution NMR
ligand FUC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemical synthesis, folding, and structural insights into O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor., Hiruma-Shimizu K, Hosoguchi K, Liu Y, Fujitani N, Ohta T, Hinou H, Matsushita T, Shimizu H, Feizi T, Nishimura S, J Am Chem Soc. 2010 Oct 27;132(42):14857-65. PMID:20883017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (2rr2.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2RR2
  • CSU: Contacts of Structural Units for 2RR2
  • Original NMR restraints for 2RR2 from PDB
  • Retrieve 2RR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RR2 from S2C, [Save to disk]
    • View 2RR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RR2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RR2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rr2] [2rr2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RR2: [EGF_CA ] by SMART
    • Other resources with information on 2RR2
  • Community annotation for 2RR2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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