2RRB Rna Binding Protein date Jun 17, 2010
title Refinement Of Rna Binding Domain In Human Tra2 Beta Protein
authors K.Tsuda, K.Kuwasako, M.Takahashi, T.Someya, M.Inoue, T.Kigawa, T.T M.Shirouzu, S.Sugano, Y.Muto, S.Yokoyama
compound source
Molecule: Cdna Flj40872 Fis, Clone Tuter2000283, Highly Sim Homo Sapiens Transformer-2-Beta (Sfrs10) Gene;
Chain: A
Fragment: Rna Recognition Motif
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: P040517-05
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the dual RNA-recognition modes of human Tra2-beta RRM., Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Guntert P, Yokoyama S, Muto Y, Nucleic Acids Res. 2011 Mar;39(4):1538-53. Epub 2010 Oct 5. PMID:20926394
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (508 Kb) [Save to disk]
  • Biological Unit Coordinates (2rrb.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2RRB
  • Original NMR restraints for 2RRB from PDB
  • Retrieve 2RRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RRB from S2C, [Save to disk]
  • View 2RRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RRB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RRB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rrb] [2rrb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RRB: [RRM ] by SMART
  • Other resources with information on 2RRB
  • Community annotation for 2RRB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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