2RTU Dna Binding Protein date Sep 12, 2013
title Solution Structure Of Oxidized Human Hmgb1 A Box
authors W.Jing, N.Tochio, S.Tate
compound source
Molecule: High Mobility Group Protein B1
Chain: A
Fragment: Hmg Box 1, Unp Residues 1-84
Synonym: High Mobility Group Protein 1, Hmg-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmgb1, Hmg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRedox-sensitive structural change in the A-domain of HMGB1 and its implication for the binding to cisplatin modified DNA., Wang J, Tochio N, Takeuchi A, Uewaki J, Kobayashi N, Tate S, Biochem Biophys Res Commun. 2013 Nov 29;441(4):701-6. PMID:24427810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (514 Kb) [Save to disk]
  • Biological Unit Coordinates (2rtu.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2RTU
  • Original NMR restraints for 2RTU from PDB
  • Retrieve 2RTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RTU from S2C, [Save to disk]
    • View 2RTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RTU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RTU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rtu_A] [2rtu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RTU: [HMG ] by SMART
    • Other resources with information on 2RTU
  • Community annotation for 2RTU at PDBWiki (http://pdbwiki.org)

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