2RUT Transcription date Jan 26, 2015
title Solution Structures Of The Dna-Binding Domain (Zf2) Of Immun Zinc-Finger Protein Zfat
authors N.Tochio, T.Umehara, T.Kigawa, S.Yokoyama
compound source
Molecule: Zinc Finger Protein Zfat
Chain: A
Fragment: Unp Residues 269-297
Synonym: Zinc Finger Gene In Aitd Susceptibility Region, Zi Protein 406;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zfat, Kiaa1485, Zfat1, Znf406
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Vector
Expression_system_vector: P060718-15
methodSolution NMR
ligand ZN enzyme
Primary referenceSolution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT., Tochio N, Umehara T, Nakabayashi K, Yoneyama M, Tsuda K, Shirouzu M, Koshiba S, Watanabe S, Kigawa T, Sasazuki T, Shirasawa S, Yokoyama S, J Struct Funct Genomics. 2015 Mar 24. PMID:25801860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (2rut.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2RUT
  • CSU: Contacts of Structural Units for 2RUT
  • Original NMR restraints for 2RUT from PDB
  • Retrieve 2RUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RUT from S2C, [Save to disk]
    • View 2RUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RUT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RUT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rut] [2rut_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RUT: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2RUT
  • Community annotation for 2RUT at PDBWiki (http://pdbwiki.org)

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