5TIM Isomerase(Intramolecular Oxidoreductase) date Apr 23, 1991
title Refined 1.83 Angstroms Structure Of Trypanosomal Triosephosp Isomerase, Crystallized In The Presence Of 2.4 M-Ammonium S Comparison With The Structure Of The Trypanosomal Triosepho Isomerase-Glycerol-3-Phosphate Complex
authors R.K.Wierenga, W.G.J.Hol
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B
Ec: 5.3.1.1
Engineered: Yes
 Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
Strain: Brucei
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.140 97.690 46.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand DTT, SO4 enzyme Isomerase E.C.5.3.1.1 BRENDA
note 5TIM supersedes 2TIM
related structures by homologous chain: 1AMK, 1TCD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRefined 1.83 A structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M-ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase-glycerol-3-phosphate complex., Wierenga RK, Noble ME, Vriend G, Nauche S, Hol WG, J Mol Biol 1991 Aug 20;220(4):995-1015. PMID:1880808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5tim.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5TIM
  • CSU: Contacts of Structural Units for 5TIM
  • Likely Quarternary Molecular Structure file(s) for 5TIM
  • Structure Factors (300 Kb)
  • Retrieve 5TIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TIM from S2C, [Save to disk]
  • Re-refined 5tim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5TIM, from MSDmotif at EBI
  • Genome occurence of 5TIM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5tima_, region A [Jmol] [rasmolscript] [script source]
        - Domain d5timb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tim_B] [5tim] [5tim_A]
  • SWISS-PROT database: [P04789]
  • Domain organization of [TPIS_TRYBB] by SWISSPFAM
    • Other resources with information on 5TIM
  • Community annotation for 5TIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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