2UCZ	Ubiquitin Conjugation	date	Nov 07, 1997
title	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerev
authors	W.J.Cook, V.Chau
compound		source
Molecule: Ubiquitin Conjugating Enzyme Chain: A Synonym: Ubc7 Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Cellular_location: Cytoplasm Gene: Ubc7 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 65	R_factor 0.227 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.500 106.500 49.300 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.93 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
note	2UCZ supersedes 1UCZ
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of a class I ubiquitin conjugating enzyme (Ubc7) from Saccharomyces cerevisiae at 2.9 angstroms resolution., Cook WJ, Martin PD, Edwards BF, Yamazaki RK, Chau V, Biochemistry 1997 Feb 18;36(7):1621-7. PMID:9048545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk] Biological Unit Coordinates (2ucz.pdb1.gz) 22 Kb CSU: Contacts of Structural Units for 2UCZ Likely Quarternary Molecular Structure file(s) for 2UCZ Structure Factors (99 Kb) Retrieve 2UCZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2UCZ from S2C, [Save to disk] Re-refined 2ucz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2UCZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2UCZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2UCZ, from MSDmotif at EBI Genome occurence of 2UCZ's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2ucz__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ucz] [2ucz_A] SWISS-PROT database: [Q02159] Domain organization of [UBC7_YEAST] by SWISSPFAM Domain found in 2UCZ: [UBCc ] by SMART

Other resources with information on 2UCZ

Community annotation for 2UCZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---