2UUG Replication, Hydrolase date Oct 31, 1998
title Escherichia Coli Uracil-Dna Glycosylase:Inhibitor Complex Wi Mutant Udg And Wild-Type Ugi
authors C.D.Putnam, A.S.Arvai, C.D.Mol, J.A.Tainer
compound source
Molecule: Uracil-Dna Glycosylase
Chain: A, B
Synonym: Udg
Ec: 3.2.2.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Strain: K-12
Cellular_location: Cytoplasm
Gene: Ung
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_vector: Pkk223-3
Expression_system_plasmid: Psb1051
Expression_system_gene: Tac

Molecule: Uracil-Dna Glycosylase Inhibitor
Chain: C, D
Synonym: Ugi
Engineered: Yes

Organism_scientific: Bacillus Phage Pbs2
Organism_taxid: 10684
Gene: Ugi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_vector: Pkk223-3
Expression_system_plasmid: Pzwtac1
Expression_system_gene: Tac
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.047 86.515 113.385 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Hydrolase E.C.3.2.2.3 BRENDA
related structures by homologous chain: 1LQG, 1UDI, 1UUG
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceProtein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase., Putnam CD, Shroyer MJ, Lundquist AJ, Mol CD, Arvai AS, Mosbaugh DW, Tainer JA, J Mol Biol 1999 Mar 26;287(2):331-46. PMID:10080896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (2uug.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (2uug.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 2UUG
  • Likely Quarternary Molecular Structure file(s) for 2UUG
  • Structure Factors (317 Kb)
  • Retrieve 2UUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UUG from S2C, [Save to disk]
  • Re-refined 2uug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UUG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UUG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2uuga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2uugb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2uugc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2uugd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uug_B] [2uug_D] [2uug_A] [2uug] [2uug_C]
  • SWISS-PROT database: [P14739] [P12295]
  • Domain organization of [UNGI_BPPB2] [UNG_ECOLI] by SWISSPFAM
  • Domains found in 2UUG: [UDG] [UreE_C ] by SMART
  • Other resources with information on 2UUG
  • Community annotation for 2UUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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