2UUJ Hydrolase Hydrolase Inhibitor date Mar 03, 2007
title Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a Resolutio
authors H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.J.Cruickshank, J.A.Hubbar J.R.Helliwell
compound source
Molecule: Human Alpha Thrombin
Chain: A
Fragment: Residues 328-363
Ec: 3.4.21.5
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood Plasma

Molecule: Prothrombin
Chain: B
Fragment: Residues 364-622
Synonym: Human Alpha Thrombin, Coagulation Factor II
Ec: 3.4.21.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood Plasma

Molecule: Hirudin I
Chain: H
Fragment: Residues 55-64
Synonym: Hirugen
Engineered: Yes
Other_details: Exosite I Inhibitor Of Thrombin

Synthetic: Yes
Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421
Other_details: This Polypeptide Chain Was Chemically Synthe The Sequence For This Chain Occurs Naturally In The C-Termi Medicinal Leech(Hirudo Medicinalis).
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.049 71.580 72.052 90.00 100.31 90.00
method X-Ray Diffractionresolution 1.32 Å
ligand 896, CA, NA, TYS enzyme Hydrolase E.C.3.4.21.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe determination of protonation states in proteins., Ahmed HU, Blakeley MP, Cianci M, Cruickshank DW, Hubbard JA, Helliwell JR, Acta Crystallogr D Biol Crystallogr. 2007 Aug;63(Pt 8):906-22. Epub 2007, Jul 17. PMID:17642517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (2uuj.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 2UUJ
  • CSU: Contacts of Structural Units for 2UUJ
  • Likely Quarternary Molecular Structure file(s) for 2UUJ
  • Structure Factors (624 Kb)
  • Retrieve 2UUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UUJ from S2C, [Save to disk]
  • Re-refined 2uuj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UUJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UUJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uuj_H] [2uuj] [2uuj_B] [2uuj_A]
  • SWISS-PROT database: [P01050] [P00734]
  • Domain organization of [HIRV1_HIRME] [THRB_HUMAN] by SWISSPFAM
  • Domain found in 2UUJ: [Tryp_SPc ] by SMART
  • Other resources with information on 2UUJ
  • Community annotation for 2UUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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