2UVF Hydrolase date Mar 09, 2007
title Structure Of Yersinia Enterocolitica Family 28 Exopolygalact Complex With Digalaturonic Acid
authors D.W.Abbott, A.B.Boraston
compound source
Molecule: Exopolygalacturonase
Chain: A, B
Engineered: Yes
 Organism_scientific: Yersinia Enterocolitica
Organism_taxid: 630
Atcc: 9610
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.232 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.015 79.659 98.493 90.00 103.90 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, ADA, NI, PEG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis for exopolygalacturonase activity in a family 28 glycoside hydrolase., Abbott DW, Boraston AB, J Mol Biol. 2007 May 18;368(5):1215-22. Epub 2007 Mar 6. PMID:17397864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (2uvf.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2uvf.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 2UVF
  • CSU: Contacts of Structural Units for 2UVF
  • Likely Quarternary Molecular Structure file(s) for 2UVF
  • Structure Factors (618 Kb)
  • Retrieve 2UVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UVF from S2C, [Save to disk]
  • Re-refined 2uvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2UVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2UVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UVF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uvf_A] [2uvf_B] [2uvf]
  • SWISS-PROT database: [O68975]
  • Domain organization of [O68975_YEREN] by SWISSPFAM
  • Domain found in 2UVF: [FN3 ] by SMART
    • Other resources with information on 2UVF
  • Community annotation for 2UVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science