2UX1 Oxidoreductase date Mar 26, 2007
title Identification Of Two Zinc-Binding Sites In The Streptococcu Protein
authors H.Havukainen, A.Kauko, A.T.Pulliainen, S.Haataja, W.Meyer-Klauck J.Finne, A.C.Papageorgiou
compound source
Molecule: Dna Protection During Starvation Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Residues 8-172
Synonym: Dps-Like Peroxide Resistance Protein
Ec: 1.16.-.-
Engineered: Yes
Mutation: Yes
Other_details: N-Terminus Truncated. First Seven Residues R Q8g Mutation
Organism_scientific: Streptococcus Suis
Organism_taxid: 1307
Strain: D282
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30ek
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.520 137.690 142.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA, CL, EPE, ZN enzyme Oxidoreductase E.C.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceStructural basis of the zinc- and terbium-mediated inhibition of ferroxidase activity in Dps ferritin-like proteins., Havukainen H, Haataja S, Kauko A, Pulliainen AT, Salminen A, Haikarainen T, Finne J, Papageorgiou AC, Protein Sci. 2008 Jun 13;. PMID:18552126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (2ux1.pdb1.gz) 310 Kb
  • LPC: Ligand-Protein Contacts for 2UX1
  • CSU: Contacts of Structural Units for 2UX1
  • Likely Quarternary Molecular Structure file(s) for 2UX1
  • Structure Factors (2830 Kb)
  • Retrieve 2UX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UX1 from S2C, [Save to disk]
  • Re-refined 2ux1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UX1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UX1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ux1] [2ux1_H] [2ux1_G] [2ux1_C] [2ux1_B] [2ux1_L] [2ux1_D] [2ux1_A] [2ux1_I] [2ux1_F] [2ux1_J] [2ux1_K] [2ux1_E]
  • SWISS-PROT database: [P0CB53]
  • Domain organization of [DPS_STRSU] by SWISSPFAM
  • Other resources with information on 2UX1
  • Community annotation for 2UX1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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