2UXL Photosynthesis date Mar 28, 2007
title X-Ray High Resolution Structure Of The Photosynthetic Reacti From Rb. Sphaeroides At Ph 10 In The Neutral State, 2nd Dat
authors J.Koepke, R.Diehm, G.Fritzsch
compound source
Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Other_details: Ph 10 Neutral State
 Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Other_details: Ph 10 Neutral State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Other_details: Ph 10 Neutral State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
symmetry Space Group: P 31 2 1
R_factor 0.176 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.005 139.005 183.554 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.88 Å
ligand BCL, BPH, FE, GOL, HTO, LDA, SPO, U10, UQ2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


    • L


    M


    Primary referencepH Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter sphaeroides in the Neutral and Charge Separated States., Koepke J, Krammer EM, Klingen AR, Sebban P, Ullmann GM, Fritzsch G, J Mol Biol. 2007 Aug 10;371(2):396-409. Epub 2007 May 10. PMID:17570397
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (2uxl.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 2UXL
  • CSU: Contacts of Structural Units for 2UXL
  • Likely Quarternary Molecular Structure file(s) for 2UXL
  • Structure Factors (272 Kb)
  • Retrieve 2UXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UXL from S2C, [Save to disk]
  • Re-refined 2uxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2UXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2UXL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UXL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uxl] [2uxl_L] [2uxl_M] [2uxl_H]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
    • Other resources with information on 2UXL
  • Community annotation for 2UXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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