2UXM Photosynthesis date Mar 28, 2007
title X-Ray High Resolution Structure Of The Photosynthetic Reacti From Rb. Sphaeroides At Ph 10 In The Charge-Separated State Dataset
authors J.Koepke, R.Diehm, G.Fritzsch
compound source
Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Other_details: Ph 10 Charge-Separated State
 Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Other_details: Ph 10 Charge-Separated State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Other_details: Ph 10 Charge-Separated State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
symmetry Space Group: P 31 2 1
R_factor 0.186 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.448 139.448 185.109 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BCL, BPH, FE, GOL, HTO, LDA, PO4, SPO, U10, UQ2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


    • L


    M


    Primary referencepH Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter sphaeroides in the Neutral and Charge Separated States., Koepke J, Krammer EM, Klingen AR, Sebban P, Ullmann GM, Fritzsch G, J Mol Biol. 2007 Aug 10;371(2):396-409. Epub 2007 May 10. PMID:17570397
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (2uxm.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 2UXM
  • CSU: Contacts of Structural Units for 2UXM
  • Likely Quarternary Molecular Structure file(s) for 2UXM
  • Structure Factors (465 Kb)
  • Retrieve 2UXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UXM from S2C, [Save to disk]
  • Re-refined 2uxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2UXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2UXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UXM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uxm_H] [2uxm_L] [2uxm] [2uxm_M]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
    • Other resources with information on 2UXM
  • Community annotation for 2UXM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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