2UXX	Oxidoreductase Repressor	date	Mar 30, 2007
title	Human Lsd1 Histone Demethylase-Corest In Complex With An Fad Tranylcypromine Adduct
authors	M.Yang, J.C.Culhane, M.Machius, P.A.Cole, H.Yu
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Fragment: Swirm Domain, Amine Oxidase Domain And Linker, Re 171-836; Synonym: Flavin-Containing Amine Oxidase Domain-Containing Braf35-Hdac Complex Protein Bhc110, Lysine- Specific Demeth Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pgex-6p1 Expression_system_plasmid: Mj23
Molecule: Rest Corepressor 1 Chain: B Fragment: Fragment Of Sant1, Linker Region And Sant2 Domain 308-482; Synonym: Protein Corest, Nuclear Receptor Corepressor 2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pet-28 Expression_system_plasmid: Mj65
symmetry	Space Group: I 2 2 2	R_factor 0.235 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.798 178.500 235.880 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.74 Å
ligand	CL, FAJ, GOL	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine., Yang M, Culhane JC, Szewczuk LM, Jalili P, Ball HL, Machius M, Cole PA, Yu H, Biochemistry. 2007 Jul 10;46(27):8058-65. Epub 2007 Jun 15. PMID:17569509

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (2uxx.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 2UXX CSU: Contacts of Structural Units for 2UXX Likely Quarternary Molecular Structure file(s) for 2UXX Structure Factors (490 Kb) Retrieve 2UXX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2UXX from S2C, [Save to disk] Re-refined 2uxx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2UXX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2UXX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2UXX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2uxx_B] [2uxx_A] [2uxx] SWISS-PROT database: [O60341] [Q9UKL0] Domain organization of [KDM1_HUMAN] [RCOR1_HUMAN] by SWISSPFAM Domain found in 2UXX: [SANT ] by SMART

Other resources with information on 2UXX

Community annotation for 2UXX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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