2UXY Hydrolase date Apr 02, 2007
title Aliphatic Amidase
authors J.Andrade, A.Karmali, M.A.Carrondo, C.Frazao
compound source
Molecule: Aliphatic Amidase
Chain: A
Fragment: Residues 1-341
Synonym: Acylamide Amidohydrolase
Ec: 3.5.1.4
Other_details: An Acyl Reaction Intermediate Was Found Boun Cys166
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
symmetry Space Group: P 63 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.706 102.706 151.320 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.25 Å
ligand C3Y, SO4 enzyme Hydrolase E.C.3.5.1.4 BRENDA
note 2UXY is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of amidase from Pseudomonas aeruginosa showing a trapped acyl transfer reaction intermediate state., Andrade J, Karmali A, Carrondo MA, Frazao C, J Biol Chem. 2007 Jul 6;282(27):19598-605. Epub 2007 Apr 17. PMID:17442671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (2uxy.pdb1.gz) 737 Kb
  • LPC: Ligand-Protein Contacts for 2UXY
  • CSU: Contacts of Structural Units for 2UXY
  • Likely Quarternary Molecular Structure file(s) for 2UXY
  • Structure Factors (1015 Kb)
  • Retrieve 2UXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UXY from S2C, [Save to disk]
  • Re-refined 2uxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2UXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2UXY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UXY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uxy] [2uxy_A]
  • SWISS-PROT database: [P11436]
  • Domain organization of [AMIE_PSEAE] by SWISSPFAM
    • Other resources with information on 2UXY
  • Community annotation for 2UXY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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