2UYK Unknown Function date Apr 10, 2007
title Crystal Structure Of E. Coli Tdcf With Bound Serine
authors J.D.Burman, C.E.M.Stevenson, R.G.Sawers, D.M.Lawson
compound source
Molecule: Protein Tdcf
Chain: A, B, C
Synonym: Tdcf
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mc4100
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet28a
Expression_system_plasmid: Pethf1
symmetry Space Group: P 21 21 2
R_factor 0.155 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.685 86.351 62.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand OCS, SER enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family., Burman JD, Stevenson CE, Sawers RG, Lawson DM, BMC Struct Biol. 2007 May 16;7:30. PMID:17506874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2uyk.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2UYK
  • CSU: Contacts of Structural Units for 2UYK
  • Likely Quarternary Molecular Structure file(s) for 2UYK
  • Structure Factors (380 Kb)
  • Retrieve 2UYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UYK from S2C, [Save to disk]
  • Re-refined 2uyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UYK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UYK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uyk_A] [2uyk_B] [2uyk] [2uyk_C]
  • SWISS-PROT database: [P0AGL2]
  • Domain organization of [TDCF_ECOLI] by SWISSPFAM
  • Other resources with information on 2UYK
  • Community annotation for 2UYK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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