2UYP	Unknown Function	date	Apr 11, 2007
title	Crystal Structure Of E. Coli Tdcf With Bound Propionate
authors	J.D.Burman, C.E.M.Stevenson, R.G.Sawers, D.M.Lawson
compound		source
Molecule: Protein Tdcf Chain: A, B, C Synonym: Tdcf Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Mc4100 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet28a Expression_system_plasmid: Pethf1
symmetry	Space Group: P 21 21 2	R_factor 0.166 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.435 85.744 62.512 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.44 Å
ligand	OCS, PPI	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family., Burman JD, Stevenson CE, Sawers RG, Lawson DM, BMC Struct Biol. 2007 May 16;7:30. PMID:17506874

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (2uyp.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 2UYP CSU: Contacts of Structural Units for 2UYP Likely Quarternary Molecular Structure file(s) for 2UYP Structure Factors (113 Kb) Retrieve 2UYP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2UYP from S2C, [Save to disk] Re-refined 2uyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2UYP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2UYP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2UYP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2uyp_A] [2uyp_B] [2uyp_C] [2uyp] SWISS-PROT database: [P0AGL2] Domain organization of [TDCF_ECOLI] by SWISSPFAM

Other resources with information on 2UYP

Community annotation for 2UYP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---