2UZD Transferase date Apr 27, 2007
title Crystal Structure Of Human Cdk2 Complexed With A Thiazolidin Inhibitor
authors C.M.Richardson, P.Dokurno, J.B.Murray, A.E.Surgenor
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase, Cyclin Dependent Kinase 2
Ec: 2.7.11.22, 2.7.1.37
Engineered: Yes
Other_details: Thr160 Phosphorylated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pgex

Molecule: Cyclin A2
Chain: B, D
Fragment: 175-432
Synonym: Cyclin-A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pet41a
symmetry Space Group: P 21 21 2
R_factor 0.208 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.559 160.292 66.509 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.72 Å
ligand C85, TPO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceDiscovery of a potent CDK2 inhibitor with a novel binding mode, using virtual screening and initial, structure-guided lead scoping., Richardson CM, Nunns CL, Williamson DS, Parratt MJ, Dokurno P, Howes R, Borgognoni J, Drysdale MJ, Finch H, Hubbard RE, Jackson PS, Kierstan P, Lentzen G, Moore JD, Murray JB, Simmonite H, Surgenor AE, Torrance CJ, Bioorg Med Chem Lett. 2007 Jul 15;17(14):3880-5. Epub 2007 May 6. PMID:17570665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (2uzd.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (2uzd.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2UZD
  • CSU: Contacts of Structural Units for 2UZD
  • Likely Quarternary Molecular Structure file(s) for 2UZD
  • Structure Factors (386 Kb)
  • Retrieve 2UZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UZD from S2C, [Save to disk]
  • Re-refined 2uzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2UZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UZD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UZD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uzd_B] [2uzd_A] [2uzd_D] [2uzd] [2uzd_C]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2UZD: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2UZD
  • Community annotation for 2UZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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