2UZI Signaling Protein Immune System date Apr 27, 2007
title Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
authors T.Tanaka, R.L.Williams, T.H.Rabbitts
compound source
Molecule: Anti-Ras Fv Heavy Chain
Chain: H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Prk-Histev-Vh-Ras-Vl

Molecule: Anti-Ras Fv Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Prk-Histev-Vh-Ras-Vl

Molecule: Gtpase Hras
Chain: R
Fragment: Residues 1-166
Synonym: H-Ras Oncoprotein, Transforming Protein P21, P21ra 1, C-H-Ras, Ha-Ras;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Prk172
symmetry Space Group: P 21 21 2
R_factor 0.194 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.528 84.632 62.592 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GTP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
R


Primary referenceTumour prevention by a single antibody domain targeting the interaction of signal transduction proteins with RAS., Tanaka T, Williams RL, Rabbitts TH, EMBO J. 2007 Jul 11;26(13):3250-9. Epub 2007 Jun 14. PMID:17568777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2uzi.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2UZI
  • CSU: Contacts of Structural Units for 2UZI
  • Likely Quarternary Molecular Structure file(s) for 2UZI
  • Retrieve 2UZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2UZI from S2C, [Save to disk]
  • View 2UZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2UZI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2UZI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2uzi_H] [2uzi] [2uzi_R] [2uzi_L]
  • SWISS-PROT database: [P01112]
  • Domain organization of [RASH_HUMAN] by SWISSPFAM
  • Domains found in 2UZI: [IGv] [RAS ] by SMART
  • Other resources with information on 2UZI
  • Community annotation for 2UZI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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