2V0G Ligase date May 14, 2007
title Leucyl-Trna Synthetase From Thermus Thermophilus Complexed W Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-Hydroxy-2, Benzoxaborole (An2690) Forming An Adduct To The Ribose Of A 76 In The Enzyme Editing Site.
authors F.Rock, W.Mao, A.Yaremchuk, M.Tukalo, T.Crepin, H.Zhou, Y.Zhang, V.Hernandez, T.Akama, S.Baker, J.Plattner, L.Shapiro, S.A.Martin S.J.Benkovic, S.Cusack, M.R.K.Alley
compound source
Molecule: Aminoacyl-Trna Synthetase
Chain: A, D
Synonym: Leucyl-Trna Synthetase
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Strain: Hb-27
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Trnaleu
Chain: B, F
Engineered: Yes
Other_details: Trnaleu Transcript With Anticodon Cag

Synthetic: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: C 1 2 1
R_factor 0.245 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
202.050 125.800 173.200 90.00 118.71 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand ANZ, HG, LEU, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • aminoacyl-tRNA editing activ...


  • Primary referenceAn antifungal agent inhibits an aminoacyl-tRNA synthetase by trapping tRNA in the editing site., Rock FL, Mao W, Yaremchuk A, Tukalo M, Crepin T, Zhou H, Zhang YK, Hernandez V, Akama T, Baker SJ, Plattner JJ, Shapiro L, Martinis SA, Benkovic SJ, Cusack S, Alley MR, Science. 2007 Jun 22;316(5832):1759-61. PMID:17588934
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (353 Kb) [Save to disk]
  • Biological Unit Coordinates (2v0g.pdb1.gz) 176 Kb
  • Biological Unit Coordinates (2v0g.pdb2.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 2V0G
  • CSU: Contacts of Structural Units for 2V0G
  • Likely Quarternary Molecular Structure file(s) for 2V0G
  • Structure Factors (383 Kb)
  • Retrieve 2V0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V0G from S2C, [Save to disk]
  • Re-refined 2v0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V0G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V0G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v0g] [2v0g_B] [2v0g_A] [2v0g_F] [2v0g_D]
  • SWISS-PROT database: [Q7SIE4]
  • Domain organization of [Q7SIE4_THETH] by SWISSPFAM
  • Other resources with information on 2V0G
  • Community annotation for 2V0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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