2V0U Transferase date May 18, 2007
title N- And C-Terminal Helices Of Oat Lov2 (404-546) Are Involved Induced Signal Transduction (Cryo Dark Structure Of Lov2 (4
authors A.S.Halavaty, K.Moffat
compound source
Molecule: Nph1-1
Chain: A
Fragment: Light, Oxygen, Voltage Domain, Residues 404-546
Synonym: Lov2
Engineered: Yes
Organism_scientific: Avena Sativa
Organism_common: Oat
Organism_taxid: 4498
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Phis-Gb1-Parallel1
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.549 56.129 66.778 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand FMN, GOL enzyme
note 2V0U (Molecule of the Month:pdb183)
Primary referenceN- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the LOV2 Domain of the Blue Light Sensor Phototropin 1 from Avena sativa(,)., Halavaty AS, Moffat K, Biochemistry. 2007 Dec 11;46(49):14001-9. Epub 2007 Nov 15. PMID:18001137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2v0u.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2V0U
  • CSU: Contacts of Structural Units for 2V0U
  • Likely Quarternary Molecular Structure file(s) for 2V0U
  • Structure Factors (337 Kb)
  • Retrieve 2V0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V0U from S2C, [Save to disk]
  • Re-refined 2v0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V0U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V0U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v0u] [2v0u_A]
  • SWISS-PROT database: [O49003]
  • Domain organization of [O49003_AVESA] by SWISSPFAM
  • Domains found in 2V0U: [PAC] [PAS ] by SMART
  • Other resources with information on 2V0U
  • Community annotation for 2V0U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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