2V1D	Oxidoreductase Repressor	date	May 23, 2007
title	Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Re
authors	F.Forneris, C.Binda, A.Adamo, E.Battaglioli, A.Mattevi
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Fragment: Residues 123-852 Synonym: Flavin-Containing Amine Oxidase Domain-Containing Braf35-Hdac Complex Protein Bhc110; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Fragment: 305-482 Synonym: Protein Corest, Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H3.1t Chain: C Fragment: Residues 2-22 Synonym: Histone H3 K4m Peptide Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.223 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.057 180.496 233.387 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	FAD	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A C
Primary reference	Structural Basis of LSD1-CoREST Selectivity in Histone H3 Recognition., Forneris F, Binda C, Adamo A, Battaglioli E, Mattevi A, J Biol Chem. 2007 Jul 13;282(28):20070-4. Epub 2007 May 30. PMID:17537733

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (2v1d.pdb1.gz) 129 Kb LPC: Ligand-Protein Contacts for 2V1D CSU: Contacts of Structural Units for 2V1D Likely Quarternary Molecular Structure file(s) for 2V1D Structure Factors (810 Kb) Retrieve 2V1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V1D from S2C, [Save to disk] Re-refined 2v1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V1D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V1D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V1D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v1d_A] [2v1d_C] [2v1d_B] [2v1d] SWISS-PROT database: [Q16695] [O60341] [Q9UKL0] Domain organization of [H31T_HUMAN] [KDM1_HUMAN] [RCOR1_HUMAN] by SWISSPFAM Domain found in 2V1D: [SANT ] by SMART

Other resources with information on 2V1D

Community annotation for 2V1D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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