2V3T Receptor date Jun 22, 2007
title Structure Of The Ligand-Binding Core Of The Ionotropic Gluta Receptor-Like Glurdelta2 In The Apo Form
authors P.Naur, B.Vestergaard, M.Gajhede, J.S.Kastrup
compound source
Molecule: Glutamate Receptor Delta-2 Subunit Synonym Glurde Delta-2;
Chain: A, B
Fragment: Ligand-Binding Core, Residues 440-551 And 664-813
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami 2
Expression_system_plasmid: Pet28
symmetry Space Group: I 21 21 21
R_factor 0.231 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.971 91.031 177.393 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand CA, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIonotropic glutamate-like receptor {delta}2 binds D-serine and glycine., Naur P, Hansen KB, Kristensen AS, Dravid SM, Pickering DS, Olsen L, Vestergaard B, Egebjerg J, Gajhede M, Traynelis SF, Kastrup JS, Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):14116-21. Epub 2007 Aug 21. PMID:17715062
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2v3t.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2V3T
  • CSU: Contacts of Structural Units for 2V3T
  • Likely Quarternary Molecular Structure file(s) for 2V3T
  • Structure Factors (279 Kb)
  • Retrieve 2V3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V3T from S2C, [Save to disk]
  • Re-refined 2v3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V3T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V3T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v3t] [2v3t_A] [2v3t_B]
  • SWISS-PROT database: [Q63226]
  • Domain organization of [GRID2_RAT] by SWISSPFAM
  • Domains found in 2V3T: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 2V3T
  • Community annotation for 2V3T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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