2V3W	Lyase	date	Jun 25, 2007
title	Crystal Structure Of The Benzoylformate Decarboxylase Varian From Pseudomonas Putida
authors	D.Gocke, L.Walter, K.Gauchenova, G.Kolter, M.Knoll, C.L.Berthold, G.Schneider, J.Pleiss, M.Mueller, M.Pohl
compound		source
Molecule: Benzoylformate Decarboxylase Chain: A, B, C, D Synonym: Bfd, Bfdc Ec: 4.1.1.7 Engineered: Yes Mutation: Yes		Organism_scientific: Pseudomonas Putida Organism_taxid: 303 Atcc: 12633 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sg13009 Expression_system_variant: Prep4 Expression_system_vector: Pkk233-2 Expression_system_plasmid: Pkk233-2bfdl461a
symmetry	Space Group: P 21 21 21	R_factor 0.180 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.704 139.938 169.054 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MG, SO4, TPP	enzyme	Lyase E.C.4.1.1.7 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Rational protein design of ThDP-dependent enzymes-engineering stereoselectivity., Gocke D, Walter L, Gauchenova E, Kolter G, Knoll M, Berthold CL, Schneider G, Pleiss J, Muller M, Pohl M, Chembiochem. 2008 Feb 15;9(3):406-12. PMID:18224647

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk] Biological Unit Coordinates (2v3w.pdb1.gz) 329 Kb LPC: Ligand-Protein Contacts for 2V3W CSU: Contacts of Structural Units for 2V3W Likely Quarternary Molecular Structure file(s) for 2V3W Structure Factors (800 Kb) Retrieve 2V3W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V3W from S2C, [Save to disk] Re-refined 2v3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V3W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V3W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V3W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v3w_D] [2v3w_B] [2v3w] [2v3w_A] [2v3w_C] SWISS-PROT database: [P20906] Domain organization of [MDLC_PSEPU] by SWISSPFAM

Other resources with information on 2V3W

Community annotation for 2V3W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---