2V4B	Hydrolase	date	Jun 28, 2007
title	Crystal Structure Of Human Adamts-1 Catalytic Domain And Cys Rich Domain (Apo-Form)
authors	S.Gerhardt, G.Hassall, P.Hawtin, E.Mccall, L.Flavell, C.Minshull, D.Hargreaves, A.Ting, R.A.Pauptit, A.E.Parker, W.M.Abbott
compound		source
Molecule: Adamts-1 Chain: A, B Fragment: Catalytic Domain Incl. Cysteine-Rich Domain, Resi 548; Synonym: A Disintegrin And Metalloproteinase With Thrombosp Motifs 1, Adam-Ts 1, Adam-Ts1, Meth-1; Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.579 64.396 113.524 90.00 90.91 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CD, MG, NA, NI, ZN	enzyme	Hydrolase E.C.3.4.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of human ADAMTS-1 reveal a conserved catalytic domain and a disintegrin-like domain with a fold homologous to cysteine-rich domains., Gerhardt S, Hassall G, Hawtin P, McCall E, Flavell L, Minshull C, Hargreaves D, Ting A, Pauptit RA, Parker AE, Abbott WM, J Mol Biol. 2007 Nov 2;373(4):891-902. Epub 2007 Aug 2. PMID:17897672

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (2v4b.pdb1.gz) 49 Kb Biological Unit Coordinates (2v4b.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 2V4B CSU: Contacts of Structural Units for 2V4B Likely Quarternary Molecular Structure file(s) for 2V4B Structure Factors (372 Kb) Retrieve 2V4B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V4B from S2C, [Save to disk] Re-refined 2v4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V4B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V4B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V4B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v4b_A] [2v4b] [2v4b_B] SWISS-PROT database: [Q9UHI8] Belongs to the sheddase (sheddase) family according to TCDB. Domain organization of [ATS1_HUMAN] by SWISSPFAM Domain found in 2V4B: [ACR ] by SMART

Other resources with information on 2V4B

Community annotation for 2V4B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---