2V4H	Transcription	date	Sep 22, 2008
title	Nemo Cc2-Lz Domain - 1d5 Darpin Complex
authors	O.Grubisha, S.Duquerroy, F.Cordier, A.Haouz, M.Delepierre, M.Vero
compound		source
Molecule: Nf-Kappa-B Essential Modulator Chain: A, B Fragment: Cc2-Lz Domain, Residues 251-337 Synonym: Nf-Kappa-B Essential Modifier, Inhibitor Of Nuclea Kappa-B Kinase Subunit Gamma, Ikb Kinase-Associated Protein Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet28b
Molecule: 1d5 Darpin Chain: C, D Engineered: Yes Other_details: See Secondary Reference		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1-Blue Expression_system_plasmid: Pqe-30
symmetry	Space Group: P 43 21 2	R_factor 0.208 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.020 63.020 436.917 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Primary reference	Inhibition of NF-kappaB activation with designed ankyrin-repeat proteins targeting the ubiquitin-binding/oligomerization domain of NEMO., Wyler E, Kaminska M, Coic YM, Baleux F, Veron M, Agou F, Protein Sci. 2007 Sep;16(9):2013-22. PMID:17766391

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (2v4h.pdb1.gz) 139 Kb CSU: Contacts of Structural Units for 2V4H Structure Factors (142 Kb) Retrieve 2V4H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V4H from S2C, [Save to disk] Re-refined 2v4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V4H in 3D

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Visual 3D analysis of 2V4H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V4H, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v4h_A] [2v4h_B] [2v4h] [2v4h_D] [2v4h_C] SWISS-PROT database: [O88522] Domain organization of [NEMO_MOUSE] by SWISSPFAM Domain found in 2V4H: [ANK ] by SMART

Other resources with information on 2V4H

Community annotation for 2V4H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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