2V4L	Transferase	date	Sep 25, 2008
title	Complex Of Human Phosphoinositide 3-Kinase Catalytic Subunit (P110 Gamma) With Pik-284
authors	B.Apsel, B.Gonzalez, J.A.Blair, T.M.Nazif, M.E.Feldman, R.L.Willi K.M.Shokat, Z.A.Knight
compound		source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform; Chain: A Fragment: Catalytic Subunit, Residues 144-1102 Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3-Kinase Sub Pi3kgamma, P120-Pi3k, Pi3k, Phosphoinositide 3-Kinase Gamma Ec: 2.7.1.153 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pvl1393
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.353 68.440 106.619 90.00 95.33 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ABJ	enzyme	Transferase E.C.2.7.1.153 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Targeted polypharmacology: discovery of dual inhibitors of tyrosine and phosphoinositide kinases., Apsel B, Blair JA, Gonzalez B, Nazif TM, Feldman ME, Aizenstein B, Hoffman R, Williams RL, Shokat KM, Knight ZA, Nat Chem Biol. 2008 Nov;4(11):691-9. Epub 2008 Oct 12. PMID:18849971

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (2v4l.pdb1.gz) 135 Kb LPC: Ligand-Protein Contacts for 2V4L CSU: Contacts of Structural Units for 2V4L Likely Quarternary Molecular Structure file(s) for 2V4L Structure Factors (886 Kb) Retrieve 2V4L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V4L from S2C, [Save to disk] Re-refined 2v4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V4L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V4L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V4L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v4l] [2v4l_A] SWISS-PROT database: [P48736] Domain organization of [PK3CG_HUMAN] by SWISSPFAM Domains found in 2V4L: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART

Other resources with information on 2V4L

Community annotation for 2V4L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---