2V8D Hydrolase date Aug 07, 2007
title Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase F Saccharomyces Kluyveri
authors S.Lundgren, B.Andersen, J.Piskur, D.Dobritzsch
compound source
Molecule: Beta-Alanine Synthase
Chain: A, B
Fragment: Residues 2-455
Ec: 3.5.1.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Kluyveri
Organism_common: Yeast
Organism_taxid: 4934
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.117 77.143 108.228 90.00 97.12 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ZN enzyme Hydrolase E.C.3.5.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of yeast -alanine synthase complexes reveal the mode of substrate binding and large scale domain closure movements., Lundgren S, Andersen B, Piskur J, Dobritzsch D, J Biol Chem. 2007 Dec 7;282(49):36037-47. Epub 2007 Oct 4. PMID:17916556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2v8d.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 2V8D
  • CSU: Contacts of Structural Units for 2V8D
  • Likely Quarternary Molecular Structure file(s) for 2V8D
  • Structure Factors (315 Kb)
  • Retrieve 2V8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V8D from S2C, [Save to disk]
  • Re-refined 2v8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V8D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V8D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v8d] [2v8d_A] [2v8d_B]
  • SWISS-PROT database: [Q96W94]
  • Domain organization of [Q96W94_SACKL] by SWISSPFAM
  • Other resources with information on 2V8D
  • Community annotation for 2V8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science