2V8U Oxidoreductase date Aug 14, 2007
title Atomic Resolution Structure Of Mn Catalase From Thermus Ther
authors V.V.Barynin, S.V.Antonyuk, A.A.Vaguine, W.R.Melik-Adamyan, A.N.P V.S.Lamsin, P.M.Harrison, P.J.Artymiuk
compound source
Molecule: Manganese-Containing Pseudocatalase
Chain: A, B
Synonym: Dimanganese Catalase
Ec: 1.11.1.6
Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27
symmetry Space Group: P 21 3
R_factor 0.106 R_Free 0.121
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.300 132.300 132.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand LI, MN, O, SO4 enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • catalase activity
  • peroxidase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (2v8u.pdb1.gz) 710 Kb
  • LPC: Ligand-Protein Contacts for 2V8U
  • CSU: Contacts of Structural Units for 2V8U
  • Likely Quarternary Molecular Structure file(s) for 2V8U
  • Structure Factors (2639 Kb)
  • Retrieve 2V8U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V8U from S2C, [Save to disk]
  • Re-refined 2v8u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V8U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V8U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V8U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v8u_A] [2v8u_B] [2v8u]
  • SWISS-PROT database: [Q84DB4]
  • Domain organization of [Q84DB4_THETH] by SWISSPFAM
  • Other resources with information on 2V8U
  • Community annotation for 2V8U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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