2V8Y	Translation	date	Aug 16, 2007
title	Crystallographic And Mass Spectrometric Characterisation Of N7-Cap Derivatives
authors	C.J.Brown, I.Mcnae, P.M.Fischer, M.D.Walkinshaw
compound		source
Molecule: Eukaryotic Translation Initiation Factor 4e Chain: A, E Synonym: Eif4e, Eif-4e, Mrna Cap-Binding Protein, Eif-4f 25 Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Plyss Rosetta Expression_system_plasmid: Pet11d
Molecule: Eukaryotic Translation Initiation Factor 4e-Bindi 1; Chain: B, F Fragment: Phas-I4e-Bp1 Binding Peptide, Residues 50-63 Synonym: 4e-Bp1, Eif4e-Binding Protein 1, Phosphorylated He Acid-Stable Protein Regulated By Insulin 1,; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.203 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.438 100.731 135.334 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MGV BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, E
Primary reference	Crystallographic and Mass Spectrometric Characterisation of eIF4E with N(7)-alkylated Cap Derivatives., Brown CJ, McNae I, Fischer PM, Walkinshaw MD, J Mol Biol. 2007 Sep 7;372(1):7-15. Epub 2007 Jun 15. PMID:17631896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2v8y.pdb1.gz) 37 Kb Biological Unit Coordinates (2v8y.pdb2.gz) 37 Kb LPC: Ligand-Protein Contacts for 2V8Y CSU: Contacts of Structural Units for 2V8Y Likely Quarternary Molecular Structure file(s) for 2V8Y Structure Factors (386 Kb) Retrieve 2V8Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V8Y from S2C, [Save to disk] Re-refined 2v8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V8Y in 3D

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Visual 3D analysis of 2V8Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V8Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v8y] [2v8y_A] [2v8y_B] [2v8y_E] [2v8y_F] SWISS-PROT database: [Q13541] [P06730] Domain organization of [4EBP1_HUMAN] [IF4E_HUMAN] by SWISSPFAM

Other resources with information on 2V8Y

Community annotation for 2V8Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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