2V9S Structural Protein date Aug 25, 2007
title Second Lrr Domain Of Human Slit2
authors C.Morlot, S.Cusack, A.A.Mccarthy
compound source
Molecule: Slit Homolog 2 Protein N-Product
Chain: A, B, C, D
Fragment: Second Lrr Domain, Residues 272-479
Synonym: Slit-2, Slit2, Slit Homolog 2 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-Ebna1
Expression_system_vector: Modified Ptt3
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.360 123.450 127.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CSD, GOL, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural insights into the Slit-Robo complex., Morlot C, Thielens NM, Ravelli RB, Hemrika W, Romijn RA, Gros P, Cusack S, McCarthy AA, Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):14923-8. Epub 2007 Sep 11. PMID:17848514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (2v9s.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2v9s.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (2v9s.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (2v9s.pdb4.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2V9S
  • CSU: Contacts of Structural Units for 2V9S
  • Likely Quarternary Molecular Structure file(s) for 2V9S
  • Structure Factors (879 Kb)
  • Retrieve 2V9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V9S from S2C, [Save to disk]
  • Re-refined 2v9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V9S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v9s_C] [2v9s] [2v9s_D] [2v9s_B] [2v9s_A]
  • SWISS-PROT database: [O94813]
  • Domain organization of [SLIT2_HUMAN] by SWISSPFAM
  • Domains found in 2V9S: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 2V9S
  • Community annotation for 2V9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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