2VB1 HEWL at 0.65 angstrom resolution date
authors Wang, J., Dauter, M., Alkire, R., Joachimiak, A., Dauter, Z.
compound source
symmetry
R_factor
R_Free 0.0952
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.65
ligand ACT, EDO, NO3 enzyme
note 2VB1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTriclinic lysozyme at 0.65 A resolution., Wang J, Dauter M, Alkire R, Joachimiak A, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1254-68. Epub 2007, Nov 16. PMID:18084073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2vb1.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2VB1
  • CSU: Contacts of Structural Units for 2VB1
  • Likely Quarternary Molecular Structure file(s) for 2VB1
  • Structure Factors (2700 Kb)
  • Retrieve 2VB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VB1 from S2C, [Save to disk]
  • Re-refined 2vb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VB1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VB1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u2vb1, region B:147-350 [Jmol] [rasmolscript] [script source]
        - Domain d1t2vb1, region B:1646-1757 [Jmol] [rasmolscript] [script source]
        - Domain d1a2vb1, region B:237-672 [Jmol] [rasmolscript] [script source]
        - Domain d1e2vb1, region B:301-468,B:533-551 [Jmol] [rasmolscript] [script source]
        - Domain d1m2vb1, region B:647-753 [Jmol] [rasmolscript] [script source]
        - Domain d1q2vb1, region B:9-145,B:406-526 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vb1] [2vb1_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 2VB1: [LYZ1 ] by SMART
  • Other resources with information on 2VB1
  • Community annotation for 2VB1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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