2VBQ	Transferase	date	Sep 14, 2007
title	Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog C Monomethyl-Acetylneamine.
authors	M.W.Vetting, M.L.Magalhaes, L.Freiburger, F.Gao, K.Auclair, J.S.B
compound		source
Molecule: Aminoglycoside 6'-N-Acetyltransferase Chain: A, B Synonym: Aminoglycoside Acetyltransferase Iy Ec: 2.3.1.82 Engineered: Yes		Organism_scientific: Salmonella Choleraesuis Organism_taxid: 591 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet28
symmetry	Space Group: C 1 2 1	R_factor 0.181 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.964 44.599 88.387 90.00 93.92 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	BSJ, GOL, NI	enzyme	Transferase E.C.2.3.1.82 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Kinetic and structural analysis of bisubstrate inhibition of the Salmonella enterica aminoglycoside 6'-N-acetyltransferase., Magalhaes ML, Vetting MW, Gao F, Freiburger L, Auclair K, Blanchard JS, Biochemistry. 2008 Jan 15;47(2):579-84. Epub 2007 Dec 21. PMID:18095712

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2vbq.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 2VBQ CSU: Contacts of Structural Units for 2VBQ Likely Quarternary Molecular Structure file(s) for 2VBQ Structure Factors (160 Kb) Retrieve 2VBQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VBQ from S2C, [Save to disk] Re-refined 2vbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VBQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VBQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VBQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vbq_A] [2vbq] [2vbq_B] SWISS-PROT database: [Q9R381] Domain organization of [Q9R381_SALEN] by SWISSPFAM

Other resources with information on 2VBQ

Community annotation for 2VBQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---