2VBU	Transferase	date	Sep 16, 2007
title	Riboflavin Kinase Mj0056 From Methanocaldococcus Jannaschii With Cdp
authors	M.D.Hartmann, M.Ammelburg, S.Djuranovic, J.Martin, A.N.Lupas, K.Z
compound		source
Molecule: Riboflavin Kinase Chain: A Synonym: Uncharacterized Protein Mj0056 Ec: 2.7.1.161 Engineered: Yes		Organism_scientific: Methanococcus Jannaschii Organism_taxid: 2190 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 41	R_factor 0.161 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.845 104.845 32.802 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	CDP, MG, MRD	enzyme	Transferase E.C.2.7.1.161 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A CTP-Dependent Archaeal Riboflavin Kinase Forms a Bridge in the Evolution of Cradle-Loop Barrels., Ammelburg M, Hartmann MD, Djuranovic S, Alva V, Koretke KK, Martin J, Sauer G, Truffault V, Zeth K, Lupas AN, Coles M, Structure. 2007 Dec;15(12):1577-90. PMID:18073108

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (2vbu.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 2VBU CSU: Contacts of Structural Units for 2VBU Likely Quarternary Molecular Structure file(s) for 2VBU Structure Factors (264 Kb) Retrieve 2VBU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VBU from S2C, [Save to disk] Re-refined 2vbu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VBU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VBU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VBU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vbu] [2vbu_A] SWISS-PROT database: [Q60365] Domain organization of [RIFK_METJA] by SWISSPFAM

Other resources with information on 2VBU

Community annotation for 2VBU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---