2VCD Isomerase date Sep 20, 2007
title Solution Structure Of The Fkbp-Domain Of Legionella Pneumoph Complex With Rapamycin
authors A.Ceymann, M.Horstmann, P.Ehses, K.Schweimer, A.K.Paschke, G.Fis P.Roesch, C.Faber
compound source
Molecule: Outer Membrane Protein Mip
Chain: A
Fragment: Fragment: Fkbp Domain, Residues 97-233
Synonym: Macrophage Infectivity Potentiator,Peptidyl-Prolyl Isomerase,Ppiase,Rotamase;
Ec: 5.2.1.8
Engineered: Yes
Other_details: Surface Protein
Organism_scientific: Legionella Pneumophila Subsp. Pneumoph (Strain Philadelphia 1 Atcc 33152 Dsm 7513);
Organism_taxid: 272624
Strain: Philadelphia 1 Atcc 33152 Dsm 7513
Gene: Mip, Lpg0791
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Alveolar Macrophages Can Be Hosts Of Legione Pneumophila
methodSolution NMR
ligand RAP enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the Legionella pneumophila Mip-rapamycin complex., Ceymann A, Horstmann M, Ehses P, Schweimer K, Paschke AK, Steinert M, Faber C, BMC Struct Biol. 2008 Mar 17;8:17. PMID:18366641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (572 Kb) [Save to disk]
  • Biological Unit Coordinates (2vcd.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2VCD
  • CSU: Contacts of Structural Units for 2VCD
  • Original NMR restraints for 2VCD from PDB
  • Retrieve 2VCD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VCD from S2C, [Save to disk]
  • View 2VCD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VCD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VCD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vcd] [2vcd_A]
  • SWISS-PROT database: [Q5ZXE0]
  • Domain organization of [MIP_LEGPH] by SWISSPFAM
  • Other resources with information on 2VCD
  • Community annotation for 2VCD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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