2VCQ Isomerase date Sep 26, 2007
title Complex Structure Of Prostaglandin D2 Synthase At 1.95a.
authors M.Hohwy, L.Spadola, B.Lundquist, K.Von Wachenfeldt, S.Persdotter P.Hawtin, J.Dahmen, I.Groth-Clausen, R.H.A.Folmer, K.Edman
compound source
Molecule: Glutathione-Requiring Prostaglandin D Synthase
Chain: A, B, C, D
Synonym: Glutathione-Dependent Pgd Synthetase, Prostaglandi Isomerase, Hematopoietic Prostaglandin D Synthase, H-Pgds, Prostaglandin D2 Synthase;
Ec: 5.3.99.2
Engineered: Yes
Other_details: The Protein Contain A Glutathione Co-Factor.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 41
R_factor 0.195 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.720 121.720 105.566 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand D25, GSH BindingDB enzyme Isomerase E.C.5.3.99.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceNovel prostaglandin d synthase inhibitors generated by fragment-based drug design., Hohwy M, Spadola L, Lundquist B, Hawtin P, Dahmen J, Groth-Clausen I, Nilsson E, Persdotter S, von Wachenfeldt K, Folmer RH, Edman K, J Med Chem. 2008 Apr 10;51(7):2178-86. Epub 2008 Mar 15. PMID:18341273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (2vcq.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (2vcq.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2VCQ
  • CSU: Contacts of Structural Units for 2VCQ
  • Likely Quarternary Molecular Structure file(s) for 2VCQ
  • Structure Factors (445 Kb)
  • Retrieve 2VCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VCQ from S2C, [Save to disk]
  • Re-refined 2vcq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VCQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VCQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vcq_C] [2vcq_D] [2vcq_B] [2vcq] [2vcq_A]
  • SWISS-PROT database: [O60760]
  • Domain organization of [HPGDS_HUMAN] by SWISSPFAM
  • Other resources with information on 2VCQ
  • Community annotation for 2VCQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science