2VEV Hydrolase date Oct 27, 2007
title Crystal Structure Of Protein Tyrosine Phosphatase 1b In Comp An Isothiazolidinone-Containing Inhibitor
authors B.Douty, B.Wayland, P.J.Ala, M.J.Bower, J.Pruitt, L.Bostrom, M.Wei L.Gonneville, R.Wynn, T.C.Burn, P.C.C.Liu, A.P.Combs, E.W.Yue
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 1
Chain: A
Fragment: Residues 1-321
Synonym: Protein-Tyrosine Phosphatase 1b, Ptp-1b, Protein T Phosphatase 1b;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.950 73.020 88.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand IZ2, MG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIsothiazolidinone inhibitors of PTP1B containing imidazoles and imidazolines., Douty B, Wayland B, Ala PJ, Bower MJ, Pruitt J, Bostrom L, Wei M, Klabe R, Gonneville L, Wynn R, Burn TC, Liu PC, Combs AP, Yue EW, Bioorg Med Chem Lett. 2008 Jan 1;18(1):66-71. Epub 2007 Nov 9. PMID:18037290
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2vev.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2VEV
  • CSU: Contacts of Structural Units for 2VEV
  • Likely Quarternary Molecular Structure file(s) for 2VEV
  • Structure Factors (517 Kb)
  • Retrieve 2VEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VEV from S2C, [Save to disk]
  • Re-refined 2vev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VEV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vev_A] [2vev]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 2VEV: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 2VEV
  • Community annotation for 2VEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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