2VF8 Dna Binding Protein date Oct 31, 2007
title Crystal Structure Of Uvra2 From Deinococcus Radiodurans
authors J.Timmins, E.Gordon, S.Caria, G.Leonard, M.S.Kuo, V.Monchois, S.Mc
compound source
Molecule: Excinuclease Abc Subunit A
Chain: A, B
Fragment: Residues 81-922
Synonym: Uvra2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Plx02
symmetry Space Group: C 2 2 21
R_factor 0.217 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.632 171.040 204.205 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ADP, PO4, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity


    • Primary referenceStructural and Mutational Analyses of Deinococcus radiodurans UvrA2 Provide Insight into DNA Binding and Damage Recognition by UvrAs., Timmins J, Gordon E, Caria S, Leonard G, Acajjaoui S, Kuo MS, Monchois V, McSweeney S, Structure. 2009 Apr 15;17(4):547-58. PMID:19368888
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (2vf8.pdb1.gz) 254 Kb
  • Biological Unit Coordinates (2vf8.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (2vf8.pdb3.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 2VF8
  • CSU: Contacts of Structural Units for 2VF8
  • Likely Quarternary Molecular Structure file(s) for 2VF8
  • Structure Factors (439 Kb)
  • Retrieve 2VF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VF8 from S2C, [Save to disk]
  • Re-refined 2vf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VF8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VF8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vf8_B] [2vf8] [2vf8_A]
  • SWISS-PROT database: [Q9RYW8]
  • Domain organization of [Q9RYW8_DEIRA] by SWISSPFAM
    • Other resources with information on 2VF8
  • Community annotation for 2VF8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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