2VGO	Crystal structure of Aurora B kinase in complex with Reversine inhibitor	date
authors	Alise, A.M.D., Amabile, G., Iovino, M., Giorgio, F.P.Di., Bartiromo, M., Sessa, F., Villa, F., Musacchio, A., Cortese, R.
compound		source
symmetry		R_factor R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.70
ligand	AD5, TPO	enzyme
note	2VGO is a representative structure
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Reversine, a novel Aurora kinases inhibitor, inhibits colony formation of human acute myeloid leukemia cells., D'Alise AM, Amabile G, Iovino M, Di Giorgio FP, Bartiromo M, Sessa F, Villa F, Musacchio A, Cortese R, Mol Cancer Ther. 2008 May;7(5):1140-9. PMID:18483302

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (2vgo.pdb1.gz) 60 Kb Biological Unit Coordinates (2vgo.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 2VGO CSU: Contacts of Structural Units for 2VGO Likely Quarternary Molecular Structure file(s) for 2VGO Structure Factors (721 Kb) Retrieve 2VGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VGO from S2C, [Save to disk] Re-refined 2vgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VGO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VGO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vgo_C] [2vgo_A] [2vgo_B] [2vgo_D] [2vgo] SWISS-PROT database: [Q6DE08] [O13024] Domain organization of [AUKBA_XENLA] [INCEA_XENLA] by SWISSPFAM Domain found in 2VGO: [S_TKc ] by SMART

Other resources with information on 2VGO

Community annotation for 2VGO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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