2VGP	Transferase	date	Nov 15, 2007
title	Crystal Structure Of Aurora B Kinase In Complex With A Amino Inhibitor
authors	C.B.Andersen, Y.Wan, J.W.Chang, C.Lee, Y.Liu, F.Sessa, F.Villa, L.N A.Musacchio, N.S.Gray
compound		source
Molecule: Serinethreonine-Protein Kinase 12-A Chain: A, B Fragment: Residues 78-361 Synonym: Aurora B Kinase, Aurora-B-A, Auroraipl1-Related K Airk2-A; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex
Molecule: Inner Centromere Protein A Chain: C, D Fragment: Residues 798-840 Synonym: Mitotic Phosphoprotein 130, Xl-Incenp Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex
symmetry	Space Group: P 1 21 1	R_factor 0.206 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.958 67.196 117.263 90.00 96.67 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	AD6, TPO	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Discovery of selective aminothiazole aurora kinase inhibitors., Andersen CB, Wan Y, Chang JW, Riggs B, Lee C, Liu Y, Sessa F, Villa F, Kwiatkowski N, Suzuki M, Nallan L, Heald R, Musacchio A, Gray NS, ACS Chem Biol. 2008 Mar 20;3(3):180-92. Epub 2008 Feb 29. PMID:18307303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (2vgp.pdb1.gz) 59 Kb Biological Unit Coordinates (2vgp.pdb2.gz) 61 Kb LPC: Ligand-Protein Contacts for 2VGP CSU: Contacts of Structural Units for 2VGP Likely Quarternary Molecular Structure file(s) for 2VGP Structure Factors (678 Kb) Retrieve 2VGP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VGP from S2C, [Save to disk] Re-refined 2vgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VGP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VGP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VGP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vgp_C] [2vgp] [2vgp_D] [2vgp_B] [2vgp_A] SWISS-PROT database: [Q6DE08] [O13024] Domain organization of [AUKBA_XENLA] [INCEA_XENLA] by SWISSPFAM Domain found in 2VGP: [S_TKc ] by SMART

Other resources with information on 2VGP

Community annotation for 2VGP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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