2VHC Hydrolase date Nov 20, 2007
title P4 Protein From Bacteriophage Phi12 N234g Mutant In Complex With Ampcpp And Mn
authors D.E.Kainov, E.J.Mancini, J.Telenius, J.Lisal, J.M.Grimes, D.H.Bamford, D.I.Stuart, R.Tuma
compound source
Molecule: Ntpase P4
Chain: A, B, C
Synonym: P4
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Phage Phi12
Organism_common: Bacteriophage Phi12
Organism_taxid: 161736
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector: Pet 32a
Expression_system_plasmid: Ppg27
symmetry Space Group: I 2 2 2
R_factor 0.174 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.120 129.518 158.522 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand APC, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural Basis of Mechanochemical Coupling in a Hexameric Molecular Motor., Kainov DE, Mancini EJ, Telenius J, Lisal J, Grimes JM, Bamford DH, Stuart DI, Tuma R, J Biol Chem. 2008 Feb 8;283(6):3607-3617. Epub 2007 Dec 5. PMID:18057007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2vhc.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 2VHC
  • CSU: Contacts of Structural Units for 2VHC
  • Likely Quarternary Molecular Structure file(s) for 2VHC
  • Retrieve 2VHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VHC from S2C, [Save to disk]
  • View 2VHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VHC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vhc_A] [2vhc_C] [2vhc_B] [2vhc]
  • SWISS-PROT database: [Q94M05]
  • Domain organization of [Q94M05_9VIRU] by SWISSPFAM
  • Other resources with information on 2VHC
  • Community annotation for 2VHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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