2VID	Hydrolase	date	Nov 30, 2007
title	Serine Protease Splb From Staphylococcus Aureus At 1.8a Reso
authors	G.Dubin, J.Stec-Niemczyk, M.Kisielewska, K.Pustelny, G.M.Popowic M.Bista, T.Kantyka, K.T.Boulware, H.R.Stennicke, A.Czarna, M.Pho P.S.Daugherty, I.B.Thogersen, J.J.Enghild, N.Thornberry, A.Dubi J.Potempa
compound		source
Molecule: Serine Protease Splb Chain: A, B Fragment: Residues 37-240 Synonym: Splb Serine Protease Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Strain: 8325-4 Expression_system: Bacillus Subtilis Expression_system_taxid: 1423 Expression_system_strain: Wb800 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pwb980
symmetry	Space Group: P 41 21 2	R_factor 0.211 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.475 117.475 73.293 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Enzymatic activity of the Staphylococcus aureus SplB serine protease is induced by substrates containing the sequence Trp-Glu-Leu-Gln., Dubin G, Stec-Niemczyk J, Kisielewska M, Pustelny K, Popowicz GM, Bista M, Kantyka T, Boulware KT, Stennicke HR, Czarna A, Phopaisarn M, Daugherty PS, Thogersen IB, Enghild JJ, Thornberry N, Dubin A, Potempa J, J Mol Biol. 2008 May 30;379(2):343-56. Epub 2008 Apr 3. PMID:18448121

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (2vid.pdb1.gz) 67 Kb Biological Unit Coordinates (2vid.pdb2.gz) 34 Kb Biological Unit Coordinates (2vid.pdb3.gz) 35 Kb CSU: Contacts of Structural Units for 2VID Likely Quarternary Molecular Structure file(s) for 2VID Structure Factors (634 Kb) Retrieve 2VID in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VID from S2C, [Save to disk] Re-refined 2vid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VID in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VID

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VID, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vid_B] [2vid] [2vid_A] SWISS-PROT database: [Q2FXC3] Domain organization of [SPLB_STAA8] by SWISSPFAM Domain found in 2VID: [Tryp_SPc ] by SMART

Other resources with information on 2VID

Community annotation for 2VID at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---