2VIT Complex (Hemagglutinin Immunoglobulin) date Dec 22, 1997
title Influenza Virus Hemagglutinin, Mutant With Thr 155 Replaced Complexed With A Neutralizing Antibody
authors T.Bizebard, D.Fleury, B.Gigant, S.A.Wharton, J.J.Skehel, M.Knosso
compound source
Molecule: Immunoglobulin (Igg1, Lambda)
Chain: A
Fragment: Fab Fragment
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell: Hybridoma

Molecule: Immunoglobulin (Igg1, Lambda)
Chain: B
Fragment: Fab Fragment
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balb-C
Cell: Hybridoma

Molecule: Hemagglutinin
Chain: C
Fragment: Proteolytic Fragment "Ha Top" Containing Ha1 Resi 328;
Engineered: Yes
Mutation: Yes
Organism_scientific: Influenza A Virus (Ax-31(H3n2))
Organism_taxid: 132504
Strain: X31
Other_details: A Reassortant Influenza Strain Containing A (H3n2) Hemagglutinin
symmetry Space Group: P 61 2 2
R_factor 0.188 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.500 85.500 515.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceAntigen distortion allows influenza virus to escape neutralization., Fleury D, Wharton SA, Skehel JJ, Knossow M, Bizebard T, Nat Struct Biol 1998 Feb;5(2):119-23. PMID:9461077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2vit.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 2VIT
  • CSU: Contacts of Structural Units for 2VIT
  • Likely Quarternary Molecular Structure file(s) for 2VIT
  • Retrieve 2VIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VIT from S2C, [Save to disk]
    • View 2VIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VIT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VIT, from MSDmotif at EBI
  • Genome occurence of 2VIT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2vita1, region A:1-110 [Jmol] [rasmolscript] [script source]
        - Domain d2vita2, region A:111-210 [Jmol] [rasmolscript] [script source]
        - Domain d2vitb1, region B:1-120 [Jmol] [rasmolscript] [script source]
        - Domain d2vitb2, region B:121-221 [Jmol] [rasmolscript] [script source]
        - Domain d2vitc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vit_A] [2vit] [2vit_C] [2vit_B]
  • SWISS-PROT database: [P03437]
  • Domain organization of [HEMA_I68A0] by SWISSPFAM
  • Domains found in 2VIT: [IG_like] [IGv ] by SMART
    • Other resources with information on 2VIT
  • Community annotation for 2VIT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2VIT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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