2VJ0	Protein Transport	date	Dec 06, 2007
title	Crystal Structure Of The Alpha-Adaptin Appendage Domain, Fro Adaptor Complex, In Complex With An Fxdnf Peptide From Amph And A Wvxf Peptide From Synaptojanin P170
authors	M.G.J.Ford, G.J.K.Praefcke, H.T.Mcmahon
compound		source
Molecule: Ap-2 Complex Subunit Alpha-2 Chain: A Fragment: Appendage Domain, Residues 693-938 Synonym: Adapter-Related Protein Complex 2 Alpha-2 Subunit, Adaptin C, Adaptor Protein Complex Ap-2 Alpha-2 Subunit, Cl Assembly Protein Complex 2 Alpha-C Large Chain, 100 Kda Coa Vesicle Protein C, Plasma Membrane Adaptor Ha2ap2 Adaptin Subunit; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Organ: Brain Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Plyss Expression_system_plasmid: Pgex-4t2
Molecule: Synaptojanin-1 Chain: P Fragment: Peptide Containing Wvxf Motif, Residues 1479-1490 Synonym: Synaptic Inositol-1,4,5-Trisphosphate 5-Phosphatas Synaptojanin-1 P170; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Amphiphysin Chain: Q Fragment: Peptide Containing Fxdnf Motif, Residues 324-330 Synonym: Amphiphysin1 Engineered: Yes		Synthetic: Yes Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116
symmetry	Space Group: C 1 2 1	R_factor 0.181 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.508 66.980 39.730 90.00 94.92 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	BEN, CL, DTD, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Solitary and repetitive binding motifs for the AP2 complex alpha -appendage in amphiphysin and other accessory proteins., Olesen LE, Ford MG, Schmid EM, Vallis Y, Babu MM, Li P, Mills IG, McMahon HT, Praefcke GJ, J Biol Chem. 2007 Nov 6;. PMID:17986441

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2vj0.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 2VJ0 CSU: Contacts of Structural Units for 2VJ0 Likely Quarternary Molecular Structure file(s) for 2VJ0 Structure Factors (716 Kb) Retrieve 2VJ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VJ0 from S2C, [Save to disk] Re-refined 2vj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2VJ0

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VJ0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vj0] [2vj0_A] [2vj0_Q] [2vj0_P] SWISS-PROT database: [O08838] [P17427] [O43426] Domain organization of [AMPH_RAT] [AP2A2_MOUSE] [SYNJ1_HUMAN] by SWISSPFAM Domain found in 2VJ0: [Alpha_adaptinC2 ] by SMART

Other resources with information on 2VJ0

Community annotation for 2VJ0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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