2VJ3 Transcription date Dec 06, 2007
title Human Notch-1 Egfs 11-13
authors S.Johnson, J.Cordle, J.Z.Tay, P.Roversi, S.M.Lea
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: A
Fragment: Egfs 11-13, Residues 411-526
Synonym: Notch 1, Hn1, Translocation-Associated Notch Prote Notch-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
Expression_system_plasmid: Pqe30
symmetry Space Group: P 31 2 1
R_factor 0.239 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.000 28.000 281.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, CL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA conserved face of the Jagged/Serrate DSL domain is involved in Notch trans-activation and cis-inhibition., Cordle J, Johnson S, Tay JZ, Roversi P, Wilkin MB, de Madrid BH, Shimizu H, Jensen S, Whiteman P, Jin B, Redfield C, Baron M, Lea SM, Handford PA, Nat Struct Mol Biol. 2008 Aug;15(8):849-57. Epub 2008 Jul 27. PMID:18660822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2vj3.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2VJ3
  • CSU: Contacts of Structural Units for 2VJ3
  • Likely Quarternary Molecular Structure file(s) for 2VJ3
  • Structure Factors (27 Kb)
  • Retrieve 2VJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJ3 from S2C, [Save to disk]
  • Re-refined 2vj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VJ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vj3] [2vj3_A]
  • SWISS-PROT database: [P46531]
  • Belongs to the selenoprotein p receptor (selp-receptor) family according to TCDB.
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 2VJ3: [EGF_CA ] by SMART
    • Other resources with information on 2VJ3
  • Community annotation for 2VJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science