2VJJ Viral Protein date Dec 11, 2007
title Tailspike Protein Of E.Coli Bacteriophage Hk620 In Complex W Hexasaccharide
authors J.J.Mueller, S.Barbirz, C.Uetrecht, R.Seckler, U.Heinemann
compound source
Molecule: Tailspike Protein
Chain: A
Fragment: Lacking The N-Terminal Head-Binding Domain, Resid 710;
Synonym: Tailspike Protein Hk620
Engineered: Yes
Other_details: Complexed With Hexasaccharide
Organism_scientific: Salmonella Phage Hk620
Organism_taxid: 155148
Strain: H
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 3 2 1
R_factor 0.133 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.910 73.910 174.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.59 Å
ligand CA, CL, GAL, GLC, GOL, K, NAG, RAM enzyme
Primary referenceCrystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related., Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R, Mol Microbiol. 2008 Jun 11;. PMID:18547389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (2vjj.pdb1.gz) 317 Kb
  • LPC: Ligand-Protein Contacts for 2VJJ
  • CSU: Contacts of Structural Units for 2VJJ
  • Likely Quarternary Molecular Structure file(s) for 2VJJ
  • Structure Factors (921 Kb)
  • Retrieve 2VJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJJ from S2C, [Save to disk]
  • Re-refined 2vjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VJJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vjj_A] [2vjj]
  • SWISS-PROT database: [Q9AYY6]
  • Domain organization of [Q9AYY6_BPHK6] by SWISSPFAM
  • Other resources with information on 2VJJ
  • Community annotation for 2VJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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