2VKE Transcription date Dec 18, 2007
title Tet Repressor Class D Complexed With Cobalt And Tetracycline
authors G.J.Palm, W.Hinrichs
compound source
Molecule: Tetracycline Repressor Protein Class D
Chain: A
Fragment: Residues 2-208
Synonym: Tet Repressor Class D
Engineered: Yes
Other_details: C-Terminus Removed For Better Crystallizatio
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rb791
Expression_system_plasmid: Pwh1590
symmetry Space Group: I 41 2 2
R_factor 0.245 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.014 67.014 180.806 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand CL, CO, TAC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecific binding of divalent metal ions to tetracycline and to the Tet repressor/tetracycline complex., Palm GJ, Lederer T, Orth P, Saenger W, Takahashi M, Hillen W, Hinrichs W, J Biol Inorg Chem. 2008 Jun 12;. PMID:18548290
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2vke.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2VKE
  • CSU: Contacts of Structural Units for 2VKE
  • Likely Quarternary Molecular Structure file(s) for 2VKE
  • Structure Factors (254 Kb)
  • Retrieve 2VKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VKE from S2C, [Save to disk]
  • Re-refined 2vke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VKE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vke_A] [2vke]
  • SWISS-PROT database: [P0ACT4]
  • Domain organization of [TETR4_ECOLX] by SWISSPFAM
  • Other resources with information on 2VKE
  • Community annotation for 2VKE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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