2VKJ Membrane Protein date Dec 19, 2007
title Structure Of The Soluble Domain Of The Membrane Protein Tm1634 From Thermotoga Maritima
authors C.J.Mccleverty, L.Columbus, A.Kreusch, S.A.Lesley, Joint Center Structural Genomics (Jcsg)
compound source
Molecule: Tm1634
Chain: A, B
Fragment: Soluble Domain, Residues 27-128
Engineered: Yes
Other_details: Additional Residues Gshm At N-Terminus
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.229 76.199 46.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand SO4 enzyme
note 2VKJ is a representative structure
Primary referenceStructure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634., McCleverty CJ, Columbus L, Kreusch A, Lesley SA, Protein Sci. 2008 Mar 27;. PMID:18369189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2vkj.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2VKJ
  • CSU: Contacts of Structural Units for 2VKJ
  • Likely Quarternary Molecular Structure file(s) for 2VKJ
  • Structure Factors (367 Kb)
  • Retrieve 2VKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VKJ from S2C, [Save to disk]
  • Re-refined 2vkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VKJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VKJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vkj] [2vkj_B] [2vkj_A]
  • SWISS-PROT database: [Q9X1W9]
  • Domain organization of [Q9X1W9_THEMA] by SWISSPFAM
  • Other resources with information on 2VKJ
  • Community annotation for 2VKJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science