2VKP Protein Binding date Dec 21, 2007
title Crystal Structure Of Btb Domain From Btbd6
authors C.D.O.Cooper, A.C.W.Pike, E.Salah, P.Filippakopoulos, G.Bunkoczi J.M.Elkins, F.Von Delft, O.Gileadi, A.Edwards, J.Weigelt, C.H.Ar S.Knapp
compound source
Molecule: Btbpoz Domain-Containing Protein 6
Chain: A, B
Fragment: Btb Domain, Residues 2-108
Synonym: Lens Btb Domain Protein, Btb Domain Protein Btbd6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65 2 2
R_factor 0.194 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.135 58.135 332.456 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, K, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2vkp.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2VKP
  • CSU: Contacts of Structural Units for 2VKP
  • Likely Quarternary Molecular Structure file(s) for 2VKP
  • Structure Factors (356 Kb)
  • Retrieve 2VKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VKP from S2C, [Save to disk]
  • Re-refined 2vkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VKP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VKP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vkp] [2vkp_B] [2vkp_A]
  • SWISS-PROT database: [Q96KE9]
  • Domain organization of [BTBD6_HUMAN] by SWISSPFAM
  • Domain found in 2VKP: [BTB ] by SMART
    • Other resources with information on 2VKP
  • Community annotation for 2VKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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