2VN5	Cell Adhesion	date	Jan 31, 2008
title	The Clostridium Cellulolyticum Dockerin Displays A Dual Bind For Its Cohesin Partner
authors	B.A.Pinheiro, J.A.M.Prates, M.R.Proctor, H.J.Gilbert, G.J.Davies V.A.Money, C.Martinez-Fleites, E.A.Bayer, C.M.G.A.Fontes, H.P.F
compound		source
Molecule: Scaffolding Protein Chain: A, C Fragment: Residues 277-427 Synonym: Cohesin Engineered: Yes		Organism_scientific: Clostridium Cellulolyticum Organism_taxid: 1521 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Endoglucanase A Chain: B, D Fragment: Residues 410-475 Synonym: Dockerin, Endo-1,4-Beta-Glucanase A, Egcca, Cellul Engineered: Yes		Organism_scientific: Clostridium Cellulolyticum Organism_taxid: 1521 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 32 2 1	R_factor 0.179 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.420 76.420 111.095 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CA	enzyme
note	2VN5 is a representative structure
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	The clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner., Pinheiro BA, Proctor MR, Martinez-Fleites C, Prates JA, Money VA, Davies GJ, Bayer EA, Fontes CM, Fierobe HP, Gilbert HJ, J Biol Chem. 2008 Apr 28;. PMID:18445585

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (2vn5.pdb1.gz) 33 Kb Biological Unit Coordinates (2vn5.pdb2.gz) 34 Kb LPC: Ligand-Protein Contacts for 2VN5 CSU: Contacts of Structural Units for 2VN5 Likely Quarternary Molecular Structure file(s) for 2VN5 Structure Factors (217 Kb) Retrieve 2VN5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VN5 from S2C, [Save to disk] Re-refined 2vn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VN5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VN5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VN5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vn5_A] [2vn5_D] [2vn5_B] [2vn5_C] [2vn5] SWISS-PROT database: [P17901] [Q45996] Domain organization of [GUNA_CLOCE] [Q45996_9CLOT] by SWISSPFAM

Other resources with information on 2VN5

Community annotation for 2VN5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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