2VN6	Cell Adhesion	date	Jan 31, 2008
title	The Clostridium Cellulolyticum Dockerin Displays A Dual Binding Mode For Its Cohesin Partner
authors	B.A.Pinheiro, J.A.M.Prates, M.R.Proctor, H.J.Gilbert, G.J.Davies, V.A.Money, C.Martinez-Fleites, E.A.Bayer, C.M.G.A.Fontes, H.P.Fierobe
compound		source
Molecule: Scaffolding Protein Chain: A Fragment: Residues 277-427 Synonym: Cohesin Engineered: Yes		Organism_scientific: Clostridium Cellulolyticum Organism_taxid: 1521 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector: Pet22b
Molecule: Endoglucanase A Chain: B Fragment: Residues 410-473 Synonym: Dockerin, Endo-1,4-Beta-Glucanase A, Egcca, Cellulase A; Engineered: Yes Mutation: Yes		Organism_scientific: Clostridium Cellulolyticum Organism_taxid: 1521 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector: Pet22b
symmetry	Space Group: P 21 21 21	R_factor 0.176 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.291 60.476 100.725 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.49 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	The clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner., Pinheiro BA, Proctor MR, Martinez-Fleites C, Prates JA, Money VA, Davies GJ, Bayer EA, Fontes CM, Fierobe HP, Gilbert HJ, J Biol Chem. 2008 Apr 28;. PMID:18445585

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (2vn6.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 2VN6 CSU: Contacts of Structural Units for 2VN6 Likely Quarternary Molecular Structure file(s) for 2VN6 Structure Factors (281 Kb) Retrieve 2VN6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VN6 from S2C, [Save to disk] Re-refined 2vn6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VN6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VN6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VN6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vn6_A] [2vn6] [2vn6_B] SWISS-PROT database: [P17901] [Q45996] Domain organization of [GUNA_CLOCE] [Q45996_9CLOT] by SWISSPFAM

Other resources with information on 2VN6

Community annotation for 2VN6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---